Loading Data

• v0 (Genomic Data)

  • Example

  • Data Manipulation

• v1 (I2B2 Demodata)

  • Dummy Generation

  • Example

The current version offers two different loading alternatives: (v0) loading of clinical and genomic data based on MAF datasets; and (v1) loading of generic i2b2 data. Currently these two loaders support each one dataset:

• v0: a genomic dataset (tcga_cbio publicly available in cBioPortal)

• v1: the i2b2 demodata.

Future releases of this software will allow for other arbitrary data sources, given that they follow a specific structure (e.g. BAM format).

Pre-Requisites

Download test data

From the medco-deployment folder, execute the resources/data/download.sh script to download the test datasets.

$ cd ~/medco-deployment/resources/data
$ bash download.sh