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Synthetic SPO Data
This page will guide you through loading example synthetic data that follows the SPO (Swiss Personalized Oncology) ontology.
Pre-Requisite: Download test data
Execute the download script to download the test datasets.
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cd ${MEDCO_SETUP_DIR}/test/data
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bash download.sh spo_synthetic
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Load the data into MedCo
A script is available to load in a simple way the data. Example of how to use it with a
test-local-3nodes deployment running on your localhost, adapt it to your own use-case:1
cd ${MEDCO_SETUP_DIR}/scripts
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for NODE_NB in 0 1 2; do bash load-i2b2csv-data.sh \
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../test/data/spo-synthetic/node_${NODE_NB} \
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localhost i2b2medcosrv${NODE_NB} \
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medcoconnectorsrv${NODE_NB}; \
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done
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Last modified 5mo ago
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